Structure of human steroid 5α-reductase 2 with the anti-androgen drug finasteride
Qingpin Xiao, Lei Wang, Shreyas Supekar, Tao Shen, Heng Liu, Fei Ye, Junzhou Huang, Hao Fan, Zhiyi Wei, Cheng Zhang
Nature Communications2020
In plain terms
Finasteride works by blocking an enzyme, 5-alpha-reductase type 2, that turns testosterone into a stronger hormone called DHT. This team produced the first detailed 3D map of the human enzyme, made by shining X-rays through tiny crystals of the protein with the drug inside. The map shows the drug fused to the enzyme's helper molecule and sealed inside a pocket in the enzyme, which fits with earlier lab measurements that an enzyme blocked this way stays blocked for weeks. It also shows which parts of the enzyme do the work, and why some inherited faults in its gene stop it working.
What it doesn’t show: It can't show what the drug does in a person's body: it is a picture of one protein, made in insect cells and studied in the lab, so it says nothing about side effects or whether any effects last after stopping.
Summary (paraphrased)
The authors reported the first atomic structure of human steroid 5-alpha-reductase 2, the enzyme finasteride inhibits, resolved at 2.8 angstroms. It revealed an unusual seven-transmembrane topology. The bound ligand was not finasteride itself but an NADP–dihydrofinasteride adduct, an intermediate of the enzyme acting on finasteride, held in a largely enclosed cavity; this showed how finasteride blocks the enzyme. How the enzyme reduces testosterone to dihydrotestosterone was proposed from a computer-docked testosterone pose, supported by two mutants (E57Q and Y91F) that reduced or abolished activity. The work filled a long-standing gap in understanding this membrane-bound steroid enzyme and provided a template for studying related reductases and inhibitor design.
Evidence
Extracted from the full text; page numbers refer to the paper. The library’s own notes are labelled as such.
- Design
- Laboratory studyStructural biology: X-ray crystal structure of human steroid 5α-reductase 2 (SRD5A2) with finasteride and NADPH, with computer docking, molecular dynamics simulations, two-residue mutagenesis with enzyme-activity assays, and mapping of disease-causing mutations
- Setting
- Laboratory study (Southern University of Science and Technology, Shenzhen; University of Pittsburgh; A*STAR Bioinformatics Institute, Singapore; Tencent AI Lab); X-ray data collected at the Advanced Photon Source, Argonne
- Population
- Recombinant full-length human SRD5A2 made in insect (Sf9) cells and purified in the presence of finasteride; no human or animal participants
- Size
- Not applicable; one structure (diffraction data merged from 5 crystals), enzyme assays repeated 3 to 5 times per condition, 4 simulations
- Exposure
- Finasteride (0.5–1.0 µM throughout purification; 0.5 mM in the activity assay) with the cofactor NADPH
- Compared with
- Wild-type enzyme vs E57Q and Y91F mutants, and with vs without finasteride, in the activity assay; comparison with published structures of steroid 5β-reductase (AKR1D1), a bacterial sterol reductase (MaSR1) and ICMT
- Outcome
- Atomic structure and ligand binding mode; conversion of testosterone to DHT (DHT/testosterone ratio by mass spectrometry); protein flexibility in simulations; location of disease-causing mutations
- Follow-up
- Not applicable (assay incubation 4 hours at 37 °C; simulations about 1.25 µs per system)
Key results
- Structure solved at 2.8 Å; the enzyme has seven transmembrane helices (unlike the 10 of the bacterial MaSR1), with all 254 residues modelled except the first four and S39–A43; deposited as PDB 7BW1 · pp. 1–3, 9, Table 1 (p. 3)
- The bound ligand is not finasteride itself but an NADP–dihydrofinasteride adduct, with the NADPH C-4 and finasteride C-2 atoms about 1.5 Å apart (a covalent bond), sealed in a cavity open only to the membrane; this matches earlier enzymology. Citing that work (Ki ≤ 3 × 10⁻¹³ M, koff = 2.74 × 10⁻⁷ s⁻¹), the paper gives a half-life of about 31 days for the enzyme–adduct complex; ln 2 / koff gives about 29 days · p. 3, Fig. 2 (p. 4)
- Proposed mechanism: residues E57 and Y91 hold the steroid's C-3 carbonyl so NADPH can transfer a hydride; the testosterone pose comes from computer docking (hydride about 2.5 Å from the Δ4,5 bond). Y91F essentially abolished DHT formation and E57Q reduced it (Fig. 3e, read from the chart, DHT/T about 2.2% wild type, 1.0% E57Q, near 0 Y91F, and about 0.5% wild type with 0.5 mM finasteride) · p. 4, Fig. 3 (p. 5)
- Selectivity: arginine R114 hydrogen-bonds finasteride's tert-butylacetamide tail; SRD5A1 has a methionine at this position, which may explain finasteride's preference for type 2 · pp. 3–4
- Simulations showed the cytosolic loop L1 (and less so L5) to be highly flexible, opening the NADPH pocket; the authors propose L1 acts as a gate for cofactor exchange, consistent with its higher crystal B-factors · p. 5, Fig. 4 (p. 6)
- Over 100 SRD5A2 gene mutations cause 5α-reductase deficiency; most mapped missense sites line the ligand cavity (e.g. R227Q, R171S, likely disrupting NADP binding), while others such as C133G and R246 changes likely affect folding or stability · p. 6, Fig. 5 (p. 7)
Limitations the authors note
- The enzyme aggregated without a ligand, so it was purified and crystallised with finasteride throughout; there is no inhibitor-free structure
- Experimental (anomalous) phasing failed; the structure was solved by molecular replacement from a computer-predicted model
- The testosterone pose is from docking, not observed, and the catalytic and inhibition mechanisms are proposed
- Residues 1–4 and S39–A43 were not resolved and were modelled for the simulations
- The adduct probably formed from insect-cell NADPH during expression
- Structures of other membrane steroid reductases (SRD5A3, DHCR7) are still needed
Also worth weighing (library’s note)
- A lab structure of one protein made in insect cells; it carries no information on doses, tissue levels or effects in people
- Activity assays used insect-cell membranes with 0.5 mM testosterone and 0.5 mM finasteride at pH 5.0, conditions chosen for the assay rather than clinical exposures (p. 9)
- Mutagenesis covered two residues, each mutant tested in 3 experiments
- The Fig. 3 legend gives four independent experiments for wild type plus finasteride (p. 5); the Methods say five (p. 9)
- Simulations are described as about 1.25 µs for each of four systems but about 5.4 µs in total, 2.7 µs per state (p. 9); four times 1.25 is 5.0
- SRD5A1 and SRD5A3 were compared only by sequence, and gene regulation (expression, methylation) is outside the study's scope
Funding: US National Institutes of Health grant R35GM128641 (to C.Z.); National Natural Science Foundation of China 31971131 and 31770791 and Shenzhen-Hong Kong Institute of Brain Science, Shenzhen Fundamental Research Institutions 2019SHIBS0002 (to Z.W.); Biomedical Research Council of A*STAR (to S.S. and H.F.) (p. 10) Interests: None declared
What it can support (library’s note): How finasteride binds and blocks human SRD5A2 at the molecular level, and why the block at the enzyme is long lasting. It cannot support any claim about clinical effects, side effects, persistence of symptoms in people, or regulation of the SRD5A2 gene.
Why it’s in the corpus
First atomic structure of a finasteride-derived adduct bound to its target enzyme (SRD5A2), showing how finasteride binds and blocks the enzyme at the molecular level — the mechanistic anchor for the corpus's gene/enzyme axis.
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