KDM1A
lysine demethylase 1A
Gene summary
A protein-coding gene on chromosome 1 (epigenetic regulation). Encodes a nuclear protein containing a SWIRM domain, a FAD-binding motif, and an amine oxidase domain. This protein is a component of several histone deacetylase complexes, though it silences genes by functioning as a histone demethylase.
Source: NCBI Gene, accessed 2026-10-07.
Protein reference (UniProt)
- Protein
Lysine-specific histone demethylase 1A
- Function (excerpt)
Histone demethylase that can demethylate both 'Lys-4' (H3K4me) and 'Lys-9' (H3K9me) of histone H3, thereby acting as a coactivator or a corepressor, depending on the context. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Acts as a corepressor by mediating demethylation of H3K4me, a specific tag for epigenetic transcriptional activation. Demethylates both mono- (H3K4me1) and di-methylated (H3K4me2). May play a role in the repression of neuronal genes. Alone, it is unable to demethylate H3K4me on nucleosomes and requires the presence of RCOR1/CoREST to achieve such activity. Also acts as a coactivator of androgen receptor (AR)-dependent transcription, by being recruited to AR target genes and mediating demethylation of H3K9me, a specific tag for epigenetic transcriptional repression.
- Subcellular location
Nucleus; Chromosome.
- Tissue specificity
Ubiquitously expressed.
- Associated conditions
Cleft palate, psychomotor retardation, and distinctive facial features (CPRF); ACTH-independent macronodular adrenal hyperplasia 3 (AIMAH3).
Source: UniProtKB/Swiss-Prot O60341, release 2026_03, licensed CC BY 4.0. This is the protein’s normal biology, not evidence about post-drug syndromes; associated conditions are inherited disorders of the gene, not PFS, PSSD or PRSD.
Why its pathway is in the library
Epigenetic persistence is the leading hypothesis for why post-drug syndromes endure after the drug is gone; chromatin regulators are therefore priority candidates in any persistence mechanism.
Written for the whole epigenetic regulation family, not for KDM1A specifically.
Mentioned in 1 corpus record
- Peer-reviewed paper
LSD1 demethylates repressive histone marks to promote androgen-receptor-dependent transcription
Eric Metzger, Melanie Wissmann, Na Yin, Judith M. Muller, Robert Schneider, Antoine H.F.M. Peters, Thomas Gunther, Reinhard Buettner… · Nature
LSD1 (KDM1A) was known as a transcriptional corepressor that demethylates histone H3 lysine 4. The authors show it also functions as a coactivator of the androgen receptor: when complexed with AR, LSD1 demethylates repressive H3K9 marks at androgen-responsive…
ARKDM1AMECH-0442005Systems review · Oct 2026
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